Black Bean Butternut Squash Boats

Roasted zucchini boats filled with Black Bean and Butternut Squash Enchilada Boats, bubbling with melty cheese and zesty red sauce. Save
Roasted zucchini boats filled with Black Bean and Butternut Squash Enchilada Boats, bubbling with melty cheese and zesty red sauce. | everydayrecipelab.com

This dish features tender zucchini boats filled with a savory blend of roasted butternut squash, black beans, and warm spices. Lightly roasted zucchini shells cradle a flavorful mix enhanced with chili powder, cumin, and smoked paprika, topped with zesty enchilada sauce and a blanket of melted cheese. Finished with fresh cilantro, avocado, and lime wedges, it delivers a colorful and hearty experience that's perfect for a wholesome vegetarian main course.

The first time I made these enchilada boats, I was trying to use up an abundance of zucchini from my garden and a lonely butternut squash sitting on my counter. My husband was skeptical about zucchini standing in for tortillas, but one bite of that roasted, cheesy goodness changed his mind completely. Now it is one of those meals I make when I want something that feels indulgent but still leaves me feeling light and satisfied.

Last fall, I made a huge batch of these for a cozy dinner with friends who swore they did not like vegetarian Mexican food. They went back for seconds and thirds, and the best part was watching them realize how satisfying plant-based meals can be when they are packed with the right ingredients and spices.

Ingredients

  • 4 large zucchini: Look for straight, evenly sized ones so they sit flat in the baking dish and hold their shape during roasting
  • 2 cups butternut squash, peeled and diced: Cutting these into small half-inch cubes helps them roast quickly and get tender without turning mushy
  • 1 small red onion, finely diced: Red onion brings a subtle sweetness that balances the earthy beans and squash
  • 2 cloves garlic, minced: Fresh garlic makes such a difference here, so do not be tempted to use the jarred stuff
  • 1 (15 oz) can black beans, drained and rinsed: Rinse them well to remove the canning liquid which can make the filling soggy
  • 1 ½ cups enchilada sauce: Homemade is wonderful, but a good quality store-bought red or green sauce works perfectly
  • 1 cup shredded Monterey Jack or cheddar cheese: Jack melts beautifully while cheddar adds a sharper bite, so choose based on your mood
  • ¼ cup crumbled queso fresco: This adds a lovely salty finish but is completely optional if you want to keep it simple
  • 1 tsp chili powder, ½ tsp ground cumin, ½ tsp smoked paprika: This trio creates that classic enchilada flavor profile everyone loves
  • Salt and pepper, to taste: The squash needs a good amount of seasoning since it roasts down and becomes very mild
  • 2 tbsp olive oil: One tablespoon for brushing the zucchini boats and one for sautéing the vegetables
  • ¼ cup chopped fresh cilantro, 1 avocado, lime wedges: These toppings bring brightness and freshness that cuts through the rich, cheesy filling

Instructions

Get your oven ready and prep the zucchini boats:
Preheat your oven to 400°F and halve the zucchini lengthwise. Use a spoon to scoop out the flesh, leaving about a quarter-inch shell, and reserve half a cup of that scooped flesh, chopping it finely.
Give the zucchini boats a head start:
Place the boats cut side up on a baking sheet, brush them lightly with one tablespoon of olive oil, and season with salt and pepper. Roast them for 15 minutes while you make the filling.
Build the flavorful filling:
Heat the remaining olive oil in a large skillet over medium heat. Sauté the onion for two minutes, then add the garlic, chopped zucchini flesh, and butternut squash. Cook for eight to ten minutes until the squash is just tender.
Season and add the beans:
Stir in the black beans, chili powder, cumin, smoked paprika, and three-quarters cup of the enchilada sauce. Let everything cook together for two to three minutes so the flavors meld, then remove from heat.
Stuff the boats and add the cheese:
Pull the zucchini boats from the oven and spoon the filling evenly into each one. Drizzle the remaining enchilada sauce over the top and sprinkle with the shredded cheese.
Bake until bubbly and serve:
Return to the oven for fifteen to twenty minutes until the cheese is melted and bubbling. Top with queso fresco, cilantro, avocado slices, and lime wedges, then serve hot.
Warm Black Bean and Butternut Squash Enchilada Boats garnished with fresh cilantro and avocado, served on a rustic dinner plate. Save
Warm Black Bean and Butternut Squash Enchilada Boats garnished with fresh cilantro and avocado, served on a rustic dinner plate. | everydayrecipelab.com

These enchilada boats have become my go-to when I want to serve something that looks impressive but comes together easily on a busy weeknight. There is something so satisfying about stuffing vegetables and watching them transform into a complete, beautiful meal that makes everyone feel taken care of.

Making It Your Own

Sweet potato works beautifully in place of butternut squash, especially when it is roasted until caramelized at the edges. I have also used corn and bell peppers when that is what I had on hand, and the result is still completely delicious.

Serving Suggestions

A simple green salad with a lime vinaigrette balances the richness perfectly, and Mexican rice makes it feel like a full fiesta spread. Sometimes I just serve them with extra tortilla chips for scooping up any filling that escapes.

Storage And Reheating

Leftovers keep well in the refrigerator for up to three days and reheat beautifully in a 350°F oven until warmed through. The flavors actually develop and get even better after a night in the fridge.

  • Wrap individual boats tightly before freezing for up to two months
  • Thaw overnight in the refrigerator before reheating
  • Add fresh toppings after reheating so they stay bright and crisp
Close-up of golden melted cheese topping Black Bean and Butternut Squash Enchilada Boats, with a side of lime wedges. Save
Close-up of golden melted cheese topping Black Bean and Butternut Squash Enchilada Boats, with a side of lime wedges. | everydayrecipelab.com

Whether you are cooking for vegetarians or just want a lighter twist on enchiladas, these boats deliver everything you love about the classic dish with an extra boost of vegetables. Hope your family loves them as much as mine does.

Recipe Questions & Answers

Yes, sweet potato or pumpkin can be wonderful alternatives, offering a similar texture and natural sweetness that complements the beans well.

Pre-roasting the zucchini shells helps firm them up and reduces moisture, ensuring they hold the filling without becoming soggy during baking.

Monterey Jack and cheddar melt nicely, providing a gooey, rich topping; queso fresco can be added after baking for a fresh, crumbly contrast.

Yes, it naturally contains no gluten, but verify the enchilada sauce ingredients to avoid hidden gluten sources.

Use plant-based cheese or omit it entirely, and ensure the enchilada sauce does not contain animal-derived ingredients.

Black Bean Butternut Squash Boats

Roasted butternut squash and black beans fill zucchini boats with zesty sauce and melted cheese for a satisfying meal.

Prep 25m
Cook 35m
Total 60m
Servings 4
Difficulty Medium

Ingredients

Vegetables

  • 4 large zucchini
  • 2 cups butternut squash, peeled and diced into ½-inch cubes
  • 1 small red onion, finely diced
  • 2 cloves garlic, minced

Beans

  • 1 (15 oz) can black beans, drained and rinsed

Sauces & Dairy

  • 1 ½ cups enchilada sauce (red or green)
  • 1 cup shredded Monterey Jack or cheddar cheese
  • ¼ cup crumbled queso fresco

Spices & Seasonings

  • 1 teaspoon chili powder
  • ½ teaspoon ground cumin
  • ½ teaspoon smoked paprika
  • Salt and black pepper to taste
  • 2 tablespoons olive oil

Toppings

  • ¼ cup chopped fresh cilantro
  • 1 avocado, sliced
  • Lime wedges

Instructions

1
Preheat Oven: Preheat oven to 400°F for roasting the zucchini boats.
2
Prepare Zucchini Boats: Halve zucchini lengthwise. Use a spoon to scoop out the flesh, leaving a ¼-inch thick shell. Reserve ½ cup of the scooped flesh and chop it finely.
3
Season and Roast Zucchini: Place zucchini boats cut side up on a baking sheet. Brush with 1 tablespoon olive oil and season with salt and pepper. Roast for 15 minutes.
4
Sauté Aromatics: Heat remaining 1 tablespoon olive oil in a large skillet over medium heat. Add onion and sauté for 2 minutes until softened. Add garlic, chopped zucchini flesh, and butternut squash; cook for 8-10 minutes until squash is just tender.
5
Add Beans and Spices: Stir in black beans, chili powder, cumin, smoked paprika, and ¾ cup enchilada sauce. Cook for 2-3 minutes to meld flavors, then remove from heat.
6
Stuff the Boats: Remove zucchini boats from oven. Spoon the black bean and squash mixture evenly into each boat, packing gently.
7
Add Sauce and Cheese: Drizzle remaining ¾ cup enchilada sauce over stuffed boats and sprinkle with shredded cheese.
8
Bake Until Melted: Return to oven and bake for 15-20 minutes until cheese is melted and bubbly and zucchini is fork-tender.
9
Garnish and Serve: Top with queso fresco, cilantro, avocado slices, and lime wedges as desired. Serve hot.
Additional Information

Equipment Needed

  • Cutting board
  • Sharp chef's knife
  • Large spoon for scooping
  • Rimmed baking sheet
  • Large skillet
  • Measuring cups and spoons

Nutrition (Per Serving)

Calories 340
Protein 13g
Carbs 44g
Fat 13g

Allergy Information

  • Contains dairy (cheese). For dairy-free version, substitute with vegan cheese or omit entirely. Verify enchilada sauce is certified gluten-free as some brands contain thickeners with hidden gluten.
Megan Holloway

Passionate home cook sharing easy, wholesome recipes and family-friendly meal ideas.